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Design of Experiments Methodology to Build a Multifactorial Statistical Model Describing the Metabolic Interactions of Alcohol Dehydrogenase Isozymes in the Ethanol Biosynthetic Pathway of the Yeast Saccharomyces cerevisiae

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논문

Design of Experiments Methodology to Build a Multifactorial Statistical Model Describing the Metabolic Interactions of Alcohol Dehydrogenase Isozymes in the Ethanol Biosynthetic Pathway of the Yeast Saccharomyces cerevisiae

학술지

ACS Synthetic biology

저자명

Brown, Steven R.; Staff, Marta; Lee, Rob; Love, John; Parker, David A.; Aves, Stephen J.; Howard, Thomas P.

초록

<P>Multifactorial approaches can quickly and efficiently model complex, interacting natural or engineered biological systems in a way that traditional one-factor-at-a-time experimentation can fail to do. We applied a Design of Experiments (DOE) approach to model ethanol biosynthesis in yeast, which is well-understood and genetically tractable, yet complex. Six alcohol dehydrogenase (ADH) isozymes catalyze ethanol synthesis, differing in their transcriptional and post-translational regulation, subcellular localization, and enzyme kinetics. We generated a combinatorial library of all ADH gene deletions and measured the impact of gene deletion(s) and environmental context on ethanol production of a subset of this library. The data were used to build a statistical model that described known behaviors of ADH isozymes and identified novel interactions. Importantly, the model described features of ADH metabolic behavior without explicit <I>a priori</I> knowledge. The method is therefore highly suited to understanding and optimizing metabolic pathways in less well-understood systems.</P><BR>[FIG OMISSION]</BR>

발행연도

2018

발행기관

American Chemical Society

ISSN

2161-5063

7

7

페이지

pp.1676-1684

주제어

Saccharomyces cerevisiae; ethanol biosynthesis; Design of Experiments (DOE); metabolic engineering; alcohol dehydrogenase

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1 2023-12-11

논문; 2018-12-31

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