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Analysis and Design of a Genetic Circuit for Dynamic Metabolic Engineering

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논문

Analysis and Design of a Genetic Circuit for Dynamic Metabolic Engineering

학술지

ACS Synthetic biology

저자명

Anesiadis, Nikolaos; Kobayashi, Hideki; Cluett, William R.; Mahadevan, Radhakrishnan

초록

<P>Recent advances in synthetic biology have equipped us with new tools for bioprocess optimization at the genetic level. Previously, we have presented an integrated <I>in silico</I> design for the dynamic control of gene expression based on a density-sensing unit and a genetic toggle switch. In the present paper, analysis of a serine-producing <I>Escherichia coli</I> mutant shows that an instantaneous ON-OFF switch leads to a maximum theoretical productivity improvement of 29.6% compared to the mutant. To further the design, global sensitivity analysis is applied here to a mathematical model of serine production in <I>E. coli</I> coupled with a genetic circuit. The model of the quorum sensing and the toggle switch involves 13 parameters of which 3 are identified as having a significant effect on serine concentration. Simulations conducted in this reduced parameter space further identified the optimal ranges for these 3 key parameters to achieve productivity values close to the maximum theoretical values. This analysis can now be used to guide the experimental implementation of a dynamic metabolic engineering strategy and reduce the time required to design the genetic circuit components.</P><P><B>Graphic Abstract</B><BR><IMG SRC='http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/asbcd6/2013/asbcd6.2013.2.issue-8/sb300129j/production/images/medium/sb-2012-00129j_0010.gif'></P><P><A href='http://pubs.acs.org/doi/suppl/10.1021/sb300129j'>ACS Electronic Supporting Info</A></P>

발행연도

2013

발행기관

American Chemical Society

ISSN

2161-5063

2

8

페이지

pp.442-452

주제어

global sensitivity analysis; quorum sensing; toggle switch; metabolic engineering

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1 2023-12-11

논문; 2013-04-09

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