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Design of stable metabolic networks

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논문

Design of stable metabolic networks

학술지

Engineering in life sciences

저자명

Di Maggio, Jimena; Blanco, Aní bal M.; Bandoni, J. Alberto; Dí az Ricci, Juan Carlos; Diaz, M. Soledad

초록

<P>In this work, we propose eigenvalue optimization combined with Lyapunov theory concepts to ensure stability of the Embden&mdash;Meyerhof&ndash;Parnas pathway, the pentose&#8208;phosphate pathway, the phosphotransferase system and fermentation reactions of <I>Escherichia coli</I>. We address the design of a metabolic network for the maximization of different metabolite production rates. The first case study focuses on serine production, based on a model that consists of 18 differential equations corresponding to dynamic mass balances for extracellular glucose and intracellular metabolites, and thirty kinetic rate expressions. A second case study addresses the design problem to maximize ethanol production, based on a dynamic model that involves mass balances for 25 metabolites and 38 kinetic rate equations. The nonlinear optimization problem including stability constraints has been solved with reduced space Successive Quadratic Programming techniques. Numerical results provide useful insights on the stability properties of the studied kinetic models.</P>

발행연도

2017

ISSN

1618-0240

ISSN

1618-2863

17

8

페이지

pp.908-915

주제어

Eigenvalue optimization; Metabolic networks; Non&#x2010; linear dynamic models; Optimal design; Stability;

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1 2023-12-11
3 2023-12-11

논문; 2017-07-10

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