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Applying systems biology tools to study n-butanol degradation in Pseudomonas putida KT2440

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논문

Applying systems biology tools to study n-butanol degradation in Pseudomonas putida KT2440

학술지

Engineering in life sciences

저자명

Vallon, Tobias; Simon, Oliver; Rendgen‐ Heugle, Beate; Frana, Sabine; Mü ckschel, Bjö rn; Broicher, Alexander; Siemann‐ Herzberg, Martin; Pfannenstiel, Jens; Hauer, Bernhard; Huber, Achim; Breuer, Michael; Takors, Ralf

초록

<P>To smoothen the process of <I>n</I>&#8208;butanol formation in <I>Pseudomonas putida</I> KT2440, detailed knowledge of the impact of this organic solvent on cell physiology and regulation is of outmost importance. Here, we conducted a detailed systems biology study to elucidate cellular responses at the metabolic, proteomic, and transcriptional level. <I>Pseudomonas putida</I> KT2440 was cultivated in multiple chemostat fermentations using <I>n</I>&#8208;butanol either as sole carbon source or together with glucose. <I>Pseudomonas putida</I> KT2440 revealed maximum growth rates (&mu;) of 0.3?h<SUP>&minus;1</SUP> with <I>n</I>&#8208;butanol as sole carbon source and of 0.4?h<SUP>&minus;1</SUP> using equal C&#8208;molar amounts of glucose and <I>n</I>&#8208;butanol. While C&#8208;mole specific substrate consumption and biomass/substrate yields appeared equal at these growth conditions, the cellular physiology was found to be substantially different: adenylate energy charge levels of 0.85 were found when <I>n&#8208;</I>butanol served as sole carbon source (similar to glucose as sole carbon source), but were reduced to 0.4 when <I>n</I>&#8208;butanol was coconsumed at stable growth conditions. Furthermore, characteristic maintenance parameters changed with increasing <I>n</I>&#8208;butanol consumption. <SUP>13</SUP>C flux analysis revealed that central metabolism was split into a glucose&#8208;fueled Entner&ndash;Doudoroff/pentose&#8208;phosphate pathway and an <I>n</I>&#8208;butanol&#8208;fueled tricarboxylic acid cycle when both substrates were coconsumed. With the help of transcriptome and proteome analysis, the degradation pathway of <I>n</I>&#8208;butanol could be unraveled, thus representing an important basis for rendering <I>P. putida</I> KT2440 from an <I>n</I>&#8208;butanol consumer to a producer in future metabolic engineering studies.</P>

발행연도

2015

ISSN

1618-0240

ISSN

1618-2863

15

8

페이지

pp.760-771

주제어

Biofuels; Butanol; Chemostat culture; Omics; Stress response

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1 2023-12-11

논문; 2015-12-31

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