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Ab initio study of molecular properties of l-tyrosine

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논문

Ab initio study of molecular properties of l-tyrosine

학술지

Journal of molecular modeling

저자명

Boč a, Roman; Š tofko, Juraj; Imrich, Richard

초록

<P><B>Context</B></P><P><I>l</I>-Tyrosine is a naturally occurring agent that acts as a precursor in biosynthesis of monoaminergic neurotransmitters in brain such as dopamine, adrenaline, noradrenaline, and hormones like thyroxine and triiodothyronine. While <I>l</I>-tyrosine in vacuo adopts the canonical aminoacid form with &#x2013;NH<SUB>2</SUB> and &#x2013;COOH functional groups, from neutral solutions, is crystallizes in the zwitterionic form possessing &#x2013;NH<SUB>3</SUB><SUP>+</SUP> and &#x2013;COO<SUP>&#x2212;</SUP> groups. As <I>l</I>-tyrosine is non-innocent agent with respect to redox processes, redox ability in water expressed by the absolute oxidation and reduction potentials is investigated. The cluster analysis applied to a set of nine related neurotransmitters and trace amines confirms that <I>l</I>-tyrosine is mostly similar to aminoacid forms of phenylalanine, octopamine, and noradrenaline.</P><P><B>Methods</B></P><P>The energetic data at the Hartree&#x2013;Fock MO-LCAO-SCF method has been conducted using def2-TZVP basis set, and improved by the many-body perturbation theory using the MP2 correction to the correlation energy. For the aminoacid form and the zwitterionic form of <I>l</I>-tyrosine, a set of molecular descriptors has been evaluated (ionization energy, electron affinity, molecular electronegativity, chemical hardness, electrophilicity index, dipole moment, quadrupole moment, and dipole polarizability). The solvent effect (CPCM) is very expressive to the zwitterionic form and alters the sign of the electron affinity from positive to negative values. In parallel, density-functional theory with B3LYP variant in the same basis set has been employed for full geometry optimization of the neutral and ionized forms of <I>l</I>-tyrosine allowing assessing the adiabatic (a) ionization/affinity processes. The complete vibrational analysis enables evaluating thermodynamic functions such as the inner energy, enthalpy, entropy, Gibbs energy, and consequently the absolute oxidation and reduction potentials. Of applied methods, the most reliable are B3LYP(a) results that account to the correlation energy and the electron and nuclear relaxation during the ionization/affinity processes.</P><P><B>Supplementary Information</B></P><P>The online version contains supplementary material available at 10.1007/s00894-023-05648-8.</P>

발행연도

2023

발행기관

Springer Berlin Heidelberg

ISSN

1610-2940

ISSN

0948-5023

29

8

페이지

pp.245

주제어

l-Tyrosine; Molecular properties; Electronic structure; Ab initio calculations; Molecular descriptors

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1 2023-12-11

논문; 2023-07-13

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