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Genome-scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis

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    • 바이오플라스틱
      1. 플라스틱
    • 바이오정밀화학
      1. 용매
      2. 화학제품
      3. 연료
    • 화장품용 기능성소재
      1. 계면활성제⁄증점제
    • 의료용 화학소재
      1. 식품첨가제
논문

Genome-scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis

학술지

Biotechnology and bioengineering

저자명

Widiastuti, Hanifah; Kim, Jae Young; Selvarasu, Suresh; Karimi, Iftekhar A.; Kim, Hyungtae; Seo, Jeong‐ Sun; Lee, Dong‐ Yup

초록

<P><B>Abstract</B></P><P>Bioethanol has been recognized as a potential alternative energy source. Among various ethanol&#8208;producing microbes, <I>Zymomonas mobilis</I> has acquired special attention due to its higher ethanol yield and tolerance. However, cellular metabolism in <I>Z. mobilis</I> remains unclear, hindering its practical application for bioethanol production. To elucidate such physiological characteristics, we reconstructed and validated a genome&#8208;scale metabolic network (<I>i</I>ZM363) of <I>Z. mobilis</I> ATCC31821 (ZM4) based on its annotated genome and biochemical information. The phenotypic behaviors and metabolic states predicted by our genome&#8208;scale model were highly consistent with the experimental observations of <I>Z. mobilis</I> ZM4 strain growing on glucose as well as NMR&#8208;measured intracellular fluxes of an engineered strain utilizing glucose, fructose, and xylose. Subsequent comparative analysis with <I>Escherichia coli</I> and <I>Saccharomyces cerevisiae</I> as well as gene essentiality and flux coupling analyses have also confirmed the functional role of <I>pdc</I> and <I>adh</I> genes in the ethanologenic activity of <I>Z. mobilis</I>, thus leading to better understanding of this natural ethanol producer. In future, the current model could be employed to identify potential cell engineering targets, thereby enhancing the productivity of ethanol in <I>Z. mobilis</I>. Biotechnol. Bioeng. 2011; 108:655&ndash;665. &copy; 2010 Wiley Periodicals, Inc.</P>

발행연도

2011

발행기관

Wiley Subscription Services, Inc., A Wiley Company

ISSN

0006-3592

ISSN

1097-0290

108

3

페이지

pp.655-665

주제어

Zymomonas mobilis; genome&#x2010; scale metabolic network; constraints&#x2010; based flux analysis; bioethanol; industrial systems biotechnology;

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1 2023-12-11

논문; 2010-11-10

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